Tagged With: Pictures

Day 64: Centrifuge

The centrifuge
(3/10/2012)

A big part of my research thesis that uses NMR has been getting the sample prep right. I showed the filters that I was using in an earlier post, but these were creating problems of their own by absorbing too much of my precious material and skewing concentrations. Since particles or clumps left in solution mess up the needed homogenous nature of an NMR sample, I couldn’t just forego this filtering step. And so I decided to try centrifuging the samples! This forces the suspended, undissolved particles to the bottom of the container and leaves the lovely, uniform liquid – the supernatant – available to be removed.

So, to back up a bit, what is a centrifuge and what does it do? Read more »

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Day 63: Homemade Egg Drop Soup

Egg Drop Soup
(3/9/2012)

To continue yesterday’s baking spree of Banana Bread, I decided to try another recipe for egg drop soup. The first recipe I tried several days ago was pretty delicious, but I felt like there was room for improvement. I uncovered the recipe below, and have to say it’s fantastic. I really wish I had had green onion and shitaki mushrooms on hand, but I left them out and created a cheaper, college version for now.

INGREDIENTS

(serves 4)

  • 3 eggs, lightly beaten
  • 4 cups of chicken stock
  • 1 tablespoon of corn starch
  • 1/2 teaspoon grated ginger
  • 1 tablespoon of soy sauce
  • 3 green onions, chopped
  • 1/4 teaspoon of white pepper (I used regular black pepper)
  • 3/4 cup of straw, enoki, or sliced shitaki mushrooms


METHOD

Separate out 1/2 cup of chicken stock and dissolve the cornstarch in it. Place the remainder of the stock in a pot, along with the ginger, soy sauce, green onions, mushrooms and pepper, and bring the mixture to a boil. Stir in the cornstarch mixture. Slowly, very slowly, pour the beaten eggs down a fork into the rapidly boiling soup. The egg will spread like ribbons. Garnish with extra chopped green onions, if desired.

Continue on to see more photos from my Project 365 here and read about My Rules if you’re interested in starting your own!


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Day 62: Banana bread

Warm banana bread with cream cheese
(3/8/2012)

As part of my lenten promises, I’ve been doing my best to be healthier. I’ve only been heating fresh, home-cooked meals full of veggies, which has included a great deal of soup. So, upon finding several over-ripe bananas on top of my microwave that I’ve neglected, I set out to salvage them in another recipe. After searching the internet and weeding out recipes, I settled on this one.

It only took about ten minutes to prep, and an hour to cook at 350°. I used four bananas, and choose to top my slices with cream cheese (delicious!). The results were quite yummy – exceptionally moist, as promised. Next time I make it I may play with the recipe and increase the butter, along the lines of this alternate recipe.

INGREDIENTS

  • 4 ripe bananas, smashed
  • 1/3 cup melted butter
  • 1 cup sugar (can easily reduce to 3/4 cup)
  • 1 egg, beaten
  • 1 teaspoon vanilla
  • 1 teaspoon baking soda
  • Pinch of salt
  • 1 1/2 cups of all-purpose flour

METHOD

Preheat the oven to 350°F. Mash bananas, and add butter. Add the sugar, egg, and vanilla. Sprinkle the baking soda and salt over the mixture and mix. Mix the flour in last. Pour into a buttered 4×8 inch loaf pan. Bake 1 hour. Allow to cool a bit before taste testing.

Continue on to see more photos from my Project 365 here and read about My Rules if you’re interested in starting your own!

Categories: Project 365: 2012 | 1 Comment

Day 61: Results of gel electrophoresis

Gel stained with Coomassie Blue
(3/7/2012)

Last week I talked at length about gel electrophoresis and the prep process using green fluorescent protein (GFP) in my entry Day 55: Gel electrophoresis.  As I mentioned, Coomassie Brilliant Blue is the most common protein stain and one of the two stains we used after running the gels last week. In addition to the gel above, stained with Coomassie Blue, we also used a silver stain. Silver staining is incredibly sensitive. When transferring the gel, you must take care in handling the gel because even fingerprints  can leave behind protein remnants that will stain.

Silver staining

More chemistry/science entries can be found under the category Science.

Or see more photos from my Project 365 here and read about My Rules if you’re interested in starting your own!

Categories: Project 365: 2012, Science | 2 Comments

Day 60: Sample prep

Research sample prep
(3/6/2012)

So very busy with research and, despite the frustrations, seems like I’m getting somewhere! Just over a week until my California trip…

Continue on to more photos from my Project 365 here, or read about My Rules if you’re interested in starting your own!

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Day 59: Trapped inside at sunset

Sunset from inside the science building
(3/5/2012)

Continue on to more photos from my Project 365 here, or read about My Rules if you’re interested in starting your own!

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Day 58: Bell’s Kalamazoo Stout

Day 58: Bell’s Kalamazoo Stout
(3/4/2012)

While at a wine tasting with a couple friends, I picked up this stout that I hadn’t yet tried but was strongly recommended and rated highly on beer advocate. The West Burlington Wine Company is quite nifty, offering single bottles for purchase without high markup, making it easy to sample specialty beers without the need of buying the entire six pack for a taste. My current favorite has been the Highland Black Mocha Stout (rated 88 on beer advocate), especially because I tend to like chocolate stouts and, in general, I prefer stouts.  The taste is very standard for a stout, to me it tasted just like a well-done stout should taste. I thoroughly enjoyed it, although I’m not sure it beats out the mocha stout!

Continue on to more photos from my Project 365 here, or read about My Rules if you’re interested in starting your own!

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Day 57: Sunset in the rearview mirror

Driving away from the sunset
(3/3/2012)

Continue on to more photos from my Project 365 here, or read about My Rules if you’re interested in starting your own!

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Day 56: Cleaning NMR tubes continued

Cleaning NMR tubes
(3/2/2012)

Considering how research and lab work has dominated my life for the past week, it’s not surprising that my photos will continue to be lab based for a little while – spending twelve to fourteen hours in this building a day doesn’t leave much daylight for much else. I’ve mentioned before that my biochemistry research thesis centers around a technique called nuclear magnetic resonance spectroscopy (NMR), and shown several photos of the special NMR tubes that I use. These, of course, must be cleaned and reused since they are fairly expensive. The first part of the cleaning process involves soaking them in special organic soap (Day 53), and afterwards we use the set-up seen above to finish them off. This is a farily common set-up in an organic lab, for those of you who have ventured into one, with an erlenmeyer flask secured by a ring stand and clamp to prevent it from falling due to the weight of the connecting tube, which pulls a vacuum when the water is on.

Read more »

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Day 55: Gel electrophoresis

Sodium dodecyl sulfate polyacrylamide gel electrophoresis
(SDS-PAGE)
(3/1/2012)

Gel electrophoresis, a technique commonly used in biochemistry, separates proteins or DNA/RNA fragments according to size or charge.  Gel electrophoresis is used over and over again in our biochemistry lab experiments, and can be applied to a variety of research. It is usually used analytically, but can also precede other characterization such as mass spectrometry or Southern blotting. For this experiment, we had previously transformed the DNA of cells so that they would produce a fluorescent protein, green fluorescent protein (GFP).

Read more »

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Day 54: Signs of Spring

Fallen flowers on campus
(2/29/2012)

See more photos from my Project 365 here or read about My Rules if you’re interested in starting your own!

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Day 53: Cleaning NMR tubes

NMR tubes in soapy water
(2/28/2012)

Not surprisingly, NMR tubes have to be cleaned like any other glassware. (Read a bit more about nuclear magnetic resonance spectroscopy here, in case you missed my earlier post.) Since I’m using humic substances (the matter that results from the breakdown of organics and is the main component of soil), you can imagine that my samples can be fairly dirty. In many ways, I’m creating expensive, quantitatively measured muddy water in a laboratory as part of my research. And so, before attempting to wash the tubes, soaking them in a soap solution is advisable. Here, I used a graduated cylinder.

Now, these tubes are quite fragile and thin, being 5mm in diameter. When placed in the filled graduated cylinder, they simply float. Even pushing them under the surface of the water isn’t sufficient to get them to sink – the small diameter allows the air to cling to the inside of the tube rather than travel up and vacate the space. In the same way, a liquid sample will not fall out of the tube when turned upside down, unless perturbed by shaking, for example. To get the tubes to sink, some liquid had to be pipetted (injected) into the individual tubes. Patches of air underwater, seen in the photo above, remained in the tubes and slowly escaped.

After the tubes have soaked, a neat little tool is used to run water up the tubes and wash away any remaining residue. Continue reading about the process here!

See more photos from my Project 365 here or read about My Rules if you’re interested in starting your own!

 

Categories: Project 365: 2012, Science | 1 Comment

Photos from Daniel Stowe Botanical Garden

Every time I go home to visit the family, one of my favorite adventures time and time again is to take my mother and some of the boys to the Daniel Stowe Botanical Garden. On the last visit to the gardens with Christian, a three year old,  I brought along some bubbles, which provided a great photo for my 365 project entry on day 21. Here’s the rest of my favorites from that day :)

Clicking on a photo opens it up in a new window, in a larger size

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Day 52: Back to the hustle and bustle

Research prep: filters
(2/27/2012)

Back in the lab today! This week is a big push to finish a lot of the data collection for my thesis. I want to have the first draft of my final research thesis all written up before I leave for California – that’s only eighteen days away! March 16th. As thrilled/excited/happy as I am to be going to California so soon for spring break and to present at the National American Chemistry Society conference, there is SO much to get done before then. So, this week I am scheduled for some eighty hours of instrument time. Insanity!

So, today’s photo is a picture of a filter I used when preparing some of my samples. Read a bit about NMR here.

See more photos from my Project 365 here or read about My Rules if you’re interested in starting your own!

Categories: Project 365: 2012, Science | 1 Comment

Day 51: Stone Mountain Park, GA

The Confederate Memorial Carving of Stone Mountain
(2/26/2012)

Once when I was younger, my soccer team had a soccer tournament in Atlanta. When we were eliminated sooner than expected, we had a number of opportunities to do some sight-seeing. Underground Atlanta  and the laser show at Stone Mountain Park stand out in my mind from that trip, and I’ve wanted to return since. This time, on my trip with Eric, I even got to ride the skyride!

The carving area spans over three acres, larger than a foot ball field, and holds the title as the largest high relief carving in the world. Construction on the site began in 1912, but finishing touches were not completed until 1972 due to difficulties with funding and architects. The carving features President Jefferson Davis, Generals Robert E. Lee, Thomas J. “Stonewall” Jackson.

Entries about my adventures in Atlanta, in between conference activities, can be found under the tag Atlanta trip.

See more photos from my Project 365 here or read about My Rules if you’re interested in starting your own!

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Day 50: Inside CNN Studio Tour

Where the news is produced
(2/25/2012)

After my presentation for the Emerging Researchers National conference in Science, Technology, Engineering and Mathematics, the day included a tour of the CNN Studio. So much to write about, updates will follow!

Entries about my adventures in Atlanta can be found under the tag Atlanta trip.

See more photos from my Project 365 here or read about My Rules if you’re interested in starting your own!

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Day 48: Welcome to Atlanta

Sunset reflected in the Westin Peachtree Plaza Hotel
(2/23/2012)

Read about the first day of my trip that accompanies the photo in the entry Arriving in Atlanta: Coca Cola World and the Georgia Aquarium :)

See more photos from my Project 365 here or read about My Rules if you’re interested in starting your own!

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More photos from Occoneechee Mountain State Natural Area

Busy busy busy! The conference went well, in the process of writing up the weekend in Atlanta. In the meantime, I have bunches of photos stored up from different adventures the past few weeks. For my 365 project on Day 29, I traveled to Occoneechee Mountain State Natural Area for the first time with a friend and took one of my favorite photos so far, rain drops falling into the stream’s reflection of nearby trees (check it out here!)

Clicking on a photo opens it up in a new window, in a larger size

 

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Photos from the rooftops of Quito, Ecuador

Some of the best memories of my life, so far, come from the time I lived in Ecuador. Looking back, it’s a bit strange that this would be the case. While abroad, my best friend betrayed me. Any inkling of respect or positive regard has long since faded, but it was fresh pain at the time. But no matter the disappointment I was experiencing, it would immediately vanish when I ventured up to this rooftop and gazed over the city of Quito.

This rooftop, the top level of the house I lived in for the duration of my time in Quito, served as a terrific place to escape, pray and admire the beauty of the city. When things are emotionally draining now, I often find myself on the road to the mountains. I definitely miss having such a spectacular view just a few floors above, rather than four hours away!

Read more »

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Day 46: NMR tubes


NMR tubes all in a row
(2/21/2012)

Busy busy busy! Atlanta tomorrow! Here’s a quick photo from my research: the special tubes I use for NMR. (Read a bit more about nuclear magnetic resonance spectroscopy here, in case you missed my earlier post.) They are thin glass, and uniformly thick. This is necessary so that they are able to spin perfectly evenly at a regular rate in the NMR itself, usually at a rate of 20 Hz. The picture shows some samples of humic substances, the result of the breakdown of organic matter (aka the major component of soil).

See more photos from my Project 365 here or read about My Rules if you’re interested in starting your own!

Categories: Project 365: 2012, Science | 3 Comments